CVE-2026-31969

Published: Mar 18, 2026 Last Modified: Mar 18, 2026
ExploitDB:
Other exploit source:
Google Dorks:
HIGH 7,1
Source: [email protected]
Attack Vector: network
Attack Complexity: low
Privileges Required: none
User Interaction: passive
Confidentiality: N/A
Integrity: N/A
Availability: N/A

Description

AI Translation Available

HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a variety of encodings and compression methods. When reading data encoded using the `BYTE_ARRAY_STOP` method, an out-by-one error in the `cram_byte_array_stop_decode_char()` function check for a full output buffer could result in a single attacker-controlled byte being written beyond the end of a heap allocation. Exploiting this bug causes a heap buffer overflow. If a user opens a file crafted to exploit this issue, it could lead to the program crashing, or overwriting of data and heap structures in ways not expected by the program. It may be possible to use this to obtain arbitrary code execution. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue.

122

Heap-based Buffer Overflow

Draft
Abstraction: Variant Structure: Simple
Common Consequences
Security Scopes Affected:
Availability Integrity Confidentiality Access Control Other
Potential Impacts:
Dos: Crash, Exit, Or Restart Dos: Resource Consumption (Cpu) Dos: Resource Consumption (Memory) Execute Unauthorized Code Or Commands Bypass Protection Mechanism Modify Memory Other
Applicable Platforms
Languages: C, C++, Memory-Unsafe
Likelihood of Exploit: High
View CWE Details
787

Out-of-bounds Write

Draft
Abstraction: Base Structure: Simple
Common Consequences
Security Scopes Affected:
Integrity Availability Other
Potential Impacts:
Modify Memory Execute Unauthorized Code Or Commands Dos: Crash, Exit, Or Restart Unexpected State
Applicable Platforms
Languages: Assembly, C, C++, Memory-Unsafe
Technologies: ICS/OT
Likelihood of Exploit: High
View CWE Details
https://github.com/samtools/htslib/commit/88cdf69e4b83bb550…
https://github.com/samtools/htslib/commit/88cdf69e4b83bb550ab4f6f7134892c2ad197…
https://github.com/samtools/htslib/security/advisories/GHSA…
https://github.com/samtools/htslib/security/advisories/GHSA-q4cj-f4h5-fqgc